Hi Mary,
Thank you for your reply. We only purchase the PGI fortran license, and we compile most of our codes with a combination of PGI fortran and gcc. Usually it works. In this instance I was able to get some help from the PGI people and these are the list of libraries they gave me in order to make it work:
-L/usr/pgi/linux86-64/12.9/lib -lpgmp -lnuma -lpthread -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgf90rtl -lpgftnrtl -lnspgc -lpgc -lrt -lpthread -lm
and that resolves that problem.
Now I am having an issue with the g2clib (undefined references to the png_set_longjmp_fn function. I believe is due to version inconsistencies between the current version of g2clib (1.4, installed on our system) and the ones used within NCL… and I read on the INSTALL that you recommend to use the package g2clib_with_changes-1.2.1.tar.gz. But I cannot find it. Where can I download this package from ?
Thank you for your help,
Tiziana.
--- Tiziana Cherubini, PhD Research Meteorologist, MKWC (http://mkwc.ifa.hawaii.edu) University of Hawaii - Dept. of Meteorology 2525 Correa Rd HIG 367 Honolulu HI 96822 tel (808) 956 4593 fax (808) 956 2877 On Oct 25, 2012, at 5:56 AM, Mary Haley <haley@ucar.edu> wrote: > Tiziana, > > Since you are using gcc and not pgcc, the "-pgf90libs" option is not going to be recognized. You may need to uncomment > the other CtoFLibraries line that lists the "-l" libraries separately. > > Is there a reason you're using gcc and not pgcc? > > --Mary > > On Oct 24, 2012, at 4:58 PM, Tiziana Cherubini wrote: > >> Aloha, >> >> I am trying to compile the ncl/ncarg graphics on our server running CentOS (uname -a => Linux io.ifa.hawaii.edu 2.6.32-279.el6.x86_64 #1 SMP Fri Jun 22 12:19:21 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux), with gcc (v4.4.6 ), and pgi (v12.9). >> >> I set up the configuration file to look like: >> >> /* >> * Description: This file contains all the directives needed to >> * tell ymake how to build NCARG/NCL on a 64-bit >> * LINUX system using the Portland Group compilers. >> * >> * Copy this file to the LINUX file in this directory >> * before you start the NCL/NCARG build. >> */ >> #define HdfDefines -DLINUX64 >> #define StdDefines -DSYSV -D_POSIX_SOURCE -D_XOPEN_SOURCE -DByteSwapped >> #define ByteSwapped >> #define Cstatic >> #define Cdynamic >> #define CppCommand '/usr/bin/cpp -traditional' >> #define CCompiler gcc >> #define FCompiler pgf90 -tp k8-64 -O -Msignextend -Mreentrant -fPIC -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE >> /* >> #define CtoFLibraries -lpgc -lpgf90 -lpgf90_rpm1 -lpgf902 -lpgftnrtl -lpghpf >> */ >> #define CtoFLibraries -pgf90libs >> #define XToolLibrary -lXt -lSM -lICE >> #define BuildShared NO >> #define ExtraExportFlags -Wl,--export-dynamic >> >> #define ArchRecLibSearch -L/usr/X11R6/lib64 >> #define ArchRecIncSearch -I/usr/X11R6/include >> >> FC = $(F77) >> >> >> But I get undefined references to the fortran libraries (please see below for an extract of the make log file). I believe the problem is in the CtoFlibaries… perhaps I shouldn't be using the -pgf90libs ? Any suggestion on what to change in this respect would be greatly appreciated. >> >> Thank you very much, >> >> Tiziana. >> >> ... >> gcc -O -o ictrans main.o ../../../.././ncarview/src/lib/libictrans/libictrans.o ../../../.././ncarview/src/lib/libctrans/libctrans.o -L../../../.././ncarview/src/lib/libcgm -lcgm -L../../../.././ncarview/src/lib/libncarg_ras -lncarg_ras -L../../../.././common/src/libncarg_c -lncarg_c -L/usr/local/ncarg/lib -L/usr/lib64/X11 -L/usr/local/lib -L/opt/pgi/linux86-64/12.9/lib -L/usr/local/netcdf-4.1.3-NoHDF4/lib -lX11 -lmfhdf -ldf -ljpeg -lz -lsz -pgf90libs >> gcc: unrecognized option '-pgf90libs' >> ../../../.././ncarview/src/lib/libcgm/libcgm.a(meta_edit.o): In function `CGM_initMetaEdit': >> meta_edit.c:(.text+0x1295): warning: the use of `mktemp' is dangerous, better use `mkstemp' >> ../../../.././ncarview/src/lib/libictrans/libictrans.o: In function `giargs_': >> /usr/local/ncl_ncarg-6.0.0-src/ncarview/src/lib/libictrans/./fort_ictrans.f:54: undefined reference to `pgf90_str_copy' >> ../../../.././ncarview/src/lib/libictrans/libictrans.o: In function `.C2_303': >> fort_ictrans.f:(.data+0x1b20): undefined reference to `pgf90_compiled' >> collect2: ld returned 1 exit status >> make[5]: *** [ictrans] Error 1 >> make[5]: Leaving directory `/usr/local/ncl_ncarg-6.0.0-src/ncarview/src/bin/ictrans' >> >> >> --- >> Tiziana Cherubini, PhD >> Research Meteorologist, MKWC (http://mkwc.ifa.hawaii.edu) >> University of Hawaii - Dept. of Meteorology >> 2525 Correa Rd HIG 367 Honolulu HI 96822 >> tel (808) 956 4593 >> fax (808) 956 2877 >> >> >> >> _______________________________________________ >> ncl-install mailing list >> List instructions, subscriber options, unsubscribe: >> http://mailman.ucar.edu/mailman/listinfo/ncl-install >Received on Thu Oct 25 15:53:34 2012
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