Re: wrapit and system

Hi Michael,

Looks like you are getting lots of good suggestions.

Do you know if the "system" command is actually being reached?

You can try adding some other system commands that do an
"ls" on the directory before you attempt the move:

dir_from = "/data/notaro/lpj_wicci_"+case+"/OUTPUT/"
dir_to = /data/notaro/lpj_wicci_"+case+"/"+models(imod)+"/realiz"+
(iset+1)+"/OUTPUT/"
files = dir_from + "*.out"

system("ls " + dir_from)
system("mv " + files + " " + dir_to)
system("ls " + dir_to)

--Mary

>>> system("mv /data/notaro/lpj_wicci_"+case+"/OUTPUT/*.out /data/
>>> notaro/
>>> lpj_wicci_"+case+"/"+models(imod)+"/realiz"+(iset+1)+"/OUTPUT/")
On Apr 14, 2010, at 12:35 PM, Michael Notaro wrote:

> I printed both lines:
>
> (0) /data/notaro/lpj_wicci_b1/OUTPUT/
> (0) /data/notaro/lpj_wicci_b1/cccma_cgcm3_1/realiz1/OUTPUT/
>
> and tried to cd into both.
> Both do exist.
>
> compute-0-1 >cd /data/notaro/lpj_wicci_b1/OUTPUT/
> compute-0-1 >cd /data/notaro/lpj_wicci_b1/cccma_cgcm3_1/realiz1/
> OUTPUT/
>
>
>
> On Apr 14, 2010, at 1:25 PM, Guangshan Chen wrote:
>
>> I tried almost same thing as yours: mv *.out to somewhere.
>>
>> begin
>> case = "output"
>> system("mv ./"+case+"/*.out ./")
>>
>> end
>>
>> It works for me.
>>
>> Could you put these two lines in your code:
>>
>> pinrt(" /data/notaro/lpj_wicci_"+case+"/OUTPUT/")
>> print("/data/notaro/lpj_wicci_"+case+"/"+models(imod)+"/realiz"+
>> (iset+1)+"/OUTPUT/")
>>
>> and then make sure you have both directories.
>>
>> Guangshan
>>
>> On Apr 14, 2010, at 1:11 PM, Michael Notaro wrote:
>>
>>> Thanks for your email. Guangshan also suggested that.
>>> I tried a simple example using mv in the system command
>>> and it worked. So the full path is not needed.
>>> So there must be something else going on.
>>>
>>>
>>>
>>> On Apr 14, 2010, at 1:01 PM, Means, James wrote:
>>>
>>>> Michael,
>>>>
>>>> This is probably a dumb suggestion, but I always get bitten in
>>>> scripts because I don't give the full path to the command. Is
>>>> there any chance that mv is not being recognized as a command
>>>> because the path is not set correctly? You might try which mv to
>>>> get the path to mv and then entering /bin/mv (or whatever it is)
>>>> instead of just mv.
>>>>
>>>> Good luck,
>>>>
>>>> Jim
>>>>
>>>> ________________________________________
>>>> From: ncl-talk-bounces@ucar.edu [ncl-talk-bounces@ucar.edu] On
>>>> Behalf Of Michael Notaro [mnotaro@wisc.edu]
>>>> Sent: Wednesday, April 14, 2010 10:53 AM
>>>> To: ncl-talk NCL
>>>> Subject: wrapit and system
>>>>
>>>> In my NCL script, I use wrapit inside a do loop.
>>>> The fortran code writes to a bunch of *.out files.
>>>> Once it's done, I use the system command to
>>>> move the *.out files somewhere else.
>>>>
>>>> But the files never get moved and no error is produced.
>>>> What am I missing here?
>>>>
>>>>
>>>> do ipt=0,Npts-1
>>>> OFFLINELPJ::lpj(Nyrs,Nmns,Tyrs,lat(ipt),lon(ipt),soilcode
>>>> (ipt),inco2(:),ndtooned(tmp_mn(ipt,:,:)),ndtooned(pre_mn
>>>> (ipt,:,:)),ndtooned(cld_mn(ipt,:,:)),ndtooned(wet_mn(ipt,:,:)))
>>>> end do
>>>>
>>>> system("mv /data/notaro/lpj_wicci_"+case+"/OUTPUT/*.out /data/
>>>> notaro/
>>>> lpj_wicci_"+case+"/"+models(imod)+"/realiz"+(iset+1)+"/OUTPUT/")
>>>>
>>>>
>>>>
>>>> Michael
>>>> _______________________________________________
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>>>
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>
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Received on Wed Apr 14 13:34:04 2010