Re: fatal:NclMalloc Failed:[errno=12]

As indicated below, more info is needed.
Specifically how much memory do you have available and how big is phi?

printVarSummary(phi)

It looks like you ran out of memory

  --
Other approaches:

Sound like you ran out of memory. You do not have to
create a new variable or file
--------------
new file: no need to create a 2nd variable (phi2)

   f1 = addfile("phi.nc","r") ; Read in first time step and
   phi = f1->phi(:,::-1,:)

diro ="./"
filo = "phi.fixed.nc"
NCFILE = diro+filo
system ("/bin/rm -f " + NCFILE)
fout = addfile(NCFILE,"c")
fout->phi2 = phi

----------------

overwrite: note the "w"

   f1 = addfile("phi.nc","w") ; Read in first time step and
   f1->phi= f1->phi(:,::-1,:) ; reorder and oerwrite

-----------------

On 12/12/12 8:17 AM, Wei Huang wrote:
> Erika,
>
> We need more info about this error.
> Can you provide us all the error message from your run?
> We need to know when/where this error happened.
> Then we can see if there is anything we can do.
> Give us little more about your computer will help too.
>
> Wei
>
> huangwei@ucar.edu
> VETS/CISL
> National Center for Atmospheric Research
> P.O. Box 3000 (1850 Table Mesa Dr.)
> Boulder, CO 80307-3000 USA
> (303) 497-8924
>
>
>
>
>
>
> On Dec 12, 2012, at 12:53 AM, Erika Folova wrote:
>
>> Hi NCL Users,
>>
>> I was attempting to reverse my latitude axis and saved them in a single netcdf file.
>> But i got an issue "out of memory". The size of intial data (phi) is 2 Gb, i simply do this command:
>>
>> ---
>> begin
>>
>> f1 = addfile("phi.nc","r") ; Read in first time step and
>> phi = f1->phi(:,::-1,:)
>> phi2 = phi
>> copy_VarCoords(phi, phi2)
>>
>> diro ="./"
>> filo = "phi.fixed.nc"
>> NCFILE = diro+filo
>> system ("/bin/rm -f " + NCFILE)
>> fout = addfile(NCFILE,"c")
>> fout->phi2 = phi2
>>
>> delete(fout)
>>
>> end
>> ----
>>
>> Then i got this error: "fatal:NclMalloc Failed:[errno=12]"
>> Anyone can help my problem how to avoid this error?
>>
>> Thanks
>> -- E. Fol
>> _______________________________________________
>> ncl-talk mailing list
>> List instructions, subscriber options, unsubscribe:
>> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
>
>
>
>
> _______________________________________________
> ncl-talk mailing list
> List instructions, subscriber options, unsubscribe:
> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
>
_______________________________________________
ncl-talk mailing list
List instructions, subscriber options, unsubscribe:
http://mailman.ucar.edu/mailman/listinfo/ncl-talk
Received on Thu Dec 13 01:19:46 2012