Re: addfile and HDF5 library version mismatch

From: Mark Waylonis <mtwaylonis_at_nyahnyahspammersnyahnyah>
Date: Mon Feb 06 2012 - 15:48:39 MST

I unset all the variables, but still get the same error.

Mark

On Feb 6, 2012, at 2:20 PM, Mark Waylonis wrote:

> I have the following HDF environmental variables set:
>
> HDF4_ROOT=/admin/software/lucid/pgi-10.9/hdf4-4.2.5
> HDF5_LIB_DIR=/admin/software/lucid/pgi-10.9/hdf5-1.8.5-patch1/lib
> HDF5_ROOT=/admin/software/lucid/pgi-10.9/hdf5-1.8.5-patch1
>
>
> Mark
>
> On Feb 6, 2012, at 7:49 AM, Mary Haley wrote:
>
>> Hi Mark,
>>
>> I was able to reproduce this error awhile back with the RedHat binaries, but not with the Debian binaries.
>>
>> Do you have any HDF environment variables set by any chance?
>>
>> env | grep HDF
>>
>> --Mary
>>
>>
>> On Feb 3, 2012, at 5:21 PM, Mark Waylonis wrote:
>>
>>> I am getting the same problem when using addfile for an '.h5' file. I checked LD_LIBRARY_PATH, and the environmental variable is set correctly. I am running ncl_ncarg-6.0.0.Linux_Debian_x86_64_nodap_gcc432. Anyone have any ideas?
>>>
>>> Warning! ***HDF5 library version mismatched error***
>>> The HDF5 header files used to compile this application do not match
>>> the version used by the HDF5 library to which this application is linked.
>>> Data corruption or segmentation faults may occur if the application continues.
>>> This can happen when an application was compiled by one version of HDF5 but
>>> linked with a different version of static or shared HDF5 library.
>>> You should recompile the application or check your shared library related
>>> settings such as 'LD_LIBRARY_PATH'.
>>> You can, at your own risk, disable this warning by setting the environment
>>> variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
>>> Setting it to 2 or higher will suppress the warning messages totally.
>>>
>>> Thank you!
>>>
>>>
>>> _____________________________
>>> Mark Waylonis
>>> Graduate Student Researcher
>>> University of California, Davis
>>> Atmospheric Science Graduate Group
>>> _____________________________
>>>
>>>
>>>
>>>
>>>
>>>
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>>> ncl-talk mailing list
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>>
>

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Received on Mon Feb 6 15:48:49 2012

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