Hi
I have a question. I'm running an ncl script on some high resolution data
and it crashes with following error message. I looked it up on the
internet. I found I should download some software, but it's only available
for NCL/6.1.0.b. I'm running NCL/6.0.0. Could you help me with that please?
Thank you
Warning! ***HDF5 library version mismatched error***
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application
continues.
This can happen when an application was compiled by one version of HDF5 but
downlod
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.8.5, library is 1.8.6
SUMMARY OF THE HDF5 CONFIGURATION
=================================
General Information:
-------------------
HDF5 Version: 1.8.6
Configured on: Mon May 23 09:21:22 MDT 2011
Configured by: haley@mirage1
Configure mode: production
Host system: x86_64-unknown-linux-gnu
Uname information: Linux mirage1 2.6.18-194.17.4.el5 #1 SMP Wed Oct
20 13:03:08 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
Byte sex: little-endian
Libraries:
Installation point: /fs/blizzard/contrib/ncl-6.0.0/external
Compiling Options:
------------------
Compilation Mode: production
C Compiler: /usr/bin/gcc ( gcc (GCC) 4.1.2 20080704 )
CFLAGS: -fPIC
H5_CFLAGS: -std=c99 -pedantic -Wall -Wextra -Wundef
-Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align
-Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes
-Wmissing-prototypes -Wmissing-declarations -Wredundant-decls
-Wnested-externs -Winline -Wno-long-long -Wfloat-equal
-Wmissing-format-attribute -Wmissing-noreturn -Wpacked
-Wdisabled-optimization -Wformat=2 -Wunreachable-code -Wendif-labels
-Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch
-Wvariadic-macros -Wnonnull -Winit-self -Wmissing-include-dirs
-Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe-loop-optimizations
-Wc++-compat -Wvolatile-register-var -O3 -fomit-frame-pointer
-finline-functions
AM_CFLAGS:
CPPFLAGS: -D_FILE_OFFSET_BITS=64
-D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE
H5_CPPFLAGS: -D_POSIX_SOURCE -DNDEBUG -UH5_DEBUG_API
AM_CPPFLAGS:
-I/fs/blizzard/contrib/ncl-6.0.0/external/include
-I/fs/blizzard/contrib/ncl-6.0.0/external/include -D_LARGEFILE_SOURCE
-D_LARGEFILE64_SOURCE -D_BSD_SOURCE
Shared Libraries: no
Static Libraries: yes
Statically Linked Executables: no
LDFLAGS:
AM_LDFLAGS:
-L/fs/blizzard/contrib/ncl-6.0.0/external/lib
-L/fs/blizzard/contrib/ncl-6.0.0/external/lib
Extra libraries: -lsz -lz -lm
Archiver: ar
Ranlib: ranlib
Debugged Packages:
API Tracing: no
Languages:
----------
Fortran: no
C++: no
Features:
---------
Parallel HDF5: no
High Level library: yes
Threadsafety: no
Default API Mapping: v18
With Deprecated Public Symbols: yes
I/O filters (external): deflate(zlib),szip(encoder)
I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset
MPE: no
Direct VFD: no
dmalloc: no
Clear file buffers before write: yes
Using memory checker: no
Function Stack Tracing: no
GPFS: no
Strict File Format Checks: no
Optimization Instrumentation: no
Large File Support (LFS): yes
H5dump Packed Bits: yes
Bye...
Abort
-- regards ******************************************************* *Alex Semenov* * * PhD Student - Research Assistant International Arctic Research Center Department of atmospheric sciences University of Alaska Fairbanks 930 Koyukuk dr, 408c3 Fairbanks, AK, USA, 99775 work phone +19074742672
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Received on Tue Oct 30 11:52:53 2012
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