Warning! ***HDF5 library version mismatched error***

From: Alexander Semenov <asemenov_at_nyahnyahspammersnyahnyah>
Date: Tue Oct 30 2012 - 11:52:32 MDT


I have a question. I'm running an ncl script on some high resolution data
and it crashes with following error message. I looked it up on the
internet. I found I should download some software, but it's only available
for NCL/6.1.0.b. I'm running NCL/6.0.0. Could you help me with that please?

Thank you

Warning! ***HDF5 library version mismatched error***
The HDF5 header files used to compile this application do not match
the version used by the HDF5 library to which this application is linked.
Data corruption or segmentation faults may occur if the application
This can happen when an application was compiled by one version of HDF5 but
linked with a different version of static or shared HDF5 library.
You should recompile the application or check your shared library related
settings such as 'LD_LIBRARY_PATH'.
You can, at your own risk, disable this warning by setting the environment
variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
Setting it to 2 or higher will suppress the warning messages totally.
Headers are 1.8.5, library is 1.8.6

General Information:
   HDF5 Version: 1.8.6
  Configured on: Mon May 23 09:21:22 MDT 2011
  Configured by: haley@mirage1
 Configure mode: production
    Host system: x86_64-unknown-linux-gnu
      Uname information: Linux mirage1 2.6.18-194.17.4.el5 #1 SMP Wed Oct
20 13:03:08 EDT 2010 x86_64 x86_64 x86_64 GNU/Linux
       Byte sex: little-endian
     Installation point: /fs/blizzard/contrib/ncl-6.0.0/external

Compiling Options:
               Compilation Mode: production
                     C Compiler: /usr/bin/gcc ( gcc (GCC) 4.1.2 20080704 )
                         CFLAGS: -fPIC
                      H5_CFLAGS: -std=c99 -pedantic -Wall -Wextra -Wundef
-Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align
-Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes
-Wmissing-prototypes -Wmissing-declarations -Wredundant-decls
-Wnested-externs -Winline -Wno-long-long -Wfloat-equal
-Wmissing-format-attribute -Wmissing-noreturn -Wpacked
-Wdisabled-optimization -Wformat=2 -Wunreachable-code -Wendif-labels
-Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch
-Wvariadic-macros -Wnonnull -Winit-self -Wmissing-include-dirs
-Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe-loop-optimizations
-Wc++-compat -Wvolatile-register-var -O3 -fomit-frame-pointer
                       CPPFLAGS: -D_FILE_OFFSET_BITS=64
-I/fs/blizzard/contrib/ncl-6.0.0/external/include -D_LARGEFILE_SOURCE
               Shared Libraries: no
               Static Libraries: yes
  Statically Linked Executables: no
   Extra libraries: -lsz -lz -lm
        Archiver: ar
   Ranlib: ranlib
       Debugged Packages:
    API Tracing: no

                        Fortran: no
                            C++: no

                  Parallel HDF5: no
             High Level library: yes
                   Threadsafety: no
            Default API Mapping: v18
 With Deprecated Public Symbols: yes
         I/O filters (external): deflate(zlib),szip(encoder)
         I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset
                            MPE: no
                     Direct VFD: no
                        dmalloc: no
Clear file buffers before write: yes
           Using memory checker: no
         Function Stack Tracing: no
                           GPFS: no
      Strict File Format Checks: no
   Optimization Instrumentation: no
       Large File Support (LFS): yes
             H5dump Packed Bits: yes

*Alex Semenov*
PhD Student - Research Assistant
International Arctic Research Center
Department of atmospheric sciences
University of Alaska Fairbanks
930 Koyukuk dr, 408c3
Fairbanks, AK, USA, 99775
work phone +19074742672

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Received on Tue Oct 30 11:52:53 2012

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