addfiles - Memory issue?

From: Manisha Ganeshan <manisha.ganeshan86_at_nyahnyahspammersnyahnyah>
Date: Fri Nov 15 2013 - 12:04:58 MST

Hello,

I'm trying to use *addfiles* to read a large dataset which contains around
30K netcdf files (each of 0.5 MB size). I get the following error, which
appears to be related to the intrinsic memory of the NCL variable? Is there
a solution, other than reading fewer batches of files at a time? It looks
like I can only read 2-3 % of the data at one time. Any help will be
appreciated.

Regards,
Nisha

fatal:Could not open (/datal/mganesha/GPS/2006/
atmPrf_C001.2006.230.06.55.G01_2010.2640_nc.nc)
HDF5-DIAG: Error detected in HDF5 (1.8.8) thread 0:
  #000: H5F.c line 794 in H5Fis_hdf5(): unable to open file
    major: Low-level I/O
    minor: Unable to initialize object
  #001: H5FD.c line 1086 in H5FD_open(): open failed
    major: Virtual File Layer
    minor: Unable to initialize object
  #002: H5FDsec2.c line 362 in H5FD_sec2_open(): unable to open file: name
= '/datal/mganesha/GPS/2006/atmPrf_C001.2006.230.05.28.G17_2010.2640_nc.nc',
errno = 24, error message = 'Too many open files', flags = 0, o_flags = 0
    major: File accessability
    minor: Unable to open file
HDF5-DIAG: Error detected in HDF5 (1.8.8) thread 0:
  #000: H5F.c line 1522 in H5Fopen(): unable to open file
    major: File accessability
    minor: Unable to open file
  #001: H5F.c line 1211 in H5F_open(): unable to open file: time = Fri Nov
15 18:57:38 2013
, name = '/datal/mganesha/GPS/2006/
atmPrf_C001.2006.230.05.28.G17_2010.2640_nc.nc', tent_flags = 0
    major: File accessability
    minor: Unable to open file
  #002: H5FD.c line 1086 in H5FD_open(): open failed
    major: Virtual File Layer
    minor: Unable to initialize object
  #003: H5FDsec2.c line 362 in H5FD_sec2_open(): unable to open file: name
= '/datal/mganesha/GPS/2006/atmPrf_C001.2006.230.05.28.G17_2010.2640_nc.nc',
errno = 24, error message = 'Too many open files', flags = 0, o_flags = 0
    major: File accessability
    minor: Unable to open file
Unable to open file: </datal/mganesha/GPS/2006/
atmPrf_C001.2006.230.05.28.G17_2010.2640_nc.nc>, at line: 32
fatal:NclHDF5: Unable to open file: <@gG:>, at line: 27304276

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Received on Fri Nov 15 12:05:11 2013

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