Re: Prolblem installing NCL with ifort+icc

Hi Cucco,

I'm taking a wild guess here, but the error about "NC_64BIT_OFFSET"
being undefined leads me to believe that maybe your HDF include files
were not installed to an "hdf" subdirectory, and hence they might have
clobbered the NetCDF version of the "netcdf.h" include file.

Please see the HDF4 build instructions and pay special note to the
"--includedir" option that is required:

   http://www.ncl.ucar.edu/Download/build_from_src.shtml#HDF-4

From your ./configure line below, I didn't see "--includedir". This is
necessary because HDF4 has its own version of the "netcdf.h" include
file, which will clobber NetCDF's version of this include file. The
NetCDF version of the file is the one you want, and it's the one with
NC_64BIT_OFFSET defined.

    [As a side, I'm not sure your --with-zlib and --with-jpeg settings
     are correct. These should be set to the root of where the zlib and
     jpeg software is installed For example, if "libz.a" is in /usr/lib
     and "zlib.h" is in /usr/include, then "--with-zlib" should be set
     to "/usr". Same for the jpeg software.]

Try rebuilding and reinstalling HDF4, but be sure to use
"--includedir=/home/WRF/GraphicUtility/HDF4/include/hdf" on the
"./configure" line (also be sure to run "make distclean" before you
run "./configure")

Then, reinstall NetCDF, to make sure that the NetCDF "netcdf.h"
file gets installed, and that it has NC_64BIT_OFFSET defined.

You can then restart the build with:

    cd $NCARG
    make all install >& make-output.2 &

--Mary

On Tue, 29 Apr 2008, Fabrizio Cucco wrote:

> Hi
>
> I'm writing because I have a problem installing Ncl\Ncarg library.I'm on
> Intel core 2 quad CPU (Q6600 2,40GHz) with 4 Gb ram , using Intel compilers
> ifort + icc.
> After I've set this few environment setting
>
> export CC=icc
> export FC=ifort
> export F90=ifort
> export F77=ifort
> export CXX=icpc
>
>
> I've installed HDF4 using the script
>
> ./configure --with-zlib=/usr/include --with-jpeg=/usr/lib64
> –prefix=/home/WRF/GraphicUtility/HDF4
>
> and I've used the rest of the other necessary libraries
> (X11,zlib,jpeg,jasper and g2clib) the ones that gives me Fedpra core 8 (the
> OS I use).I've checked the version of this libraries and all the versions
> are compatibile with the version that requires Ncl.
>
> Then I've tested my Fortran compiler if it can handle block data and it is
> OK.
>
> I've modified the LINUX config file in this way:
>
>
> #define HdfDefines -DLINUX
>
> #define StdDefines -DSYSV -D_POSIX_SOURCE -D_XOPEN_SOURCE -DByteSwapped
>
> #define ByteSwapped
>
> #define Cstatic
>
> #define Cdynamic
>
> #define CppCommand '/usr/bin/cpp -traditional'
>
> #define CCompiler icc -mp
>
> #define FCompiler ifort -mp -Vaxlib
>
> #define CtoFLibraries -lCEPCF90 -lF90 -lm -lifcore
> "-L/opt/intel/fce/10.1.013/lib"
>
> #define CcOptions -ansi
>
> #define XToolLibrary -lXt -lSM -lICE
>
> #define BuildShared NO
>
> #define XLibrary -lXpm -lX11 -lXext
>
> #define ArchRecLibSearch -L/usr/lib64 -L/home/WRF/GraphicUtility/HDF4/lib
>
> #define ArchRecIncSearch -I/usr/include
> -I/home/WRF/GraphicUtility/HDF4/include
>
>
> where I've added many script used by LINUX_INTEL_file and I've added the
> path to the HDF4 files needed.
>
>
> Then I've launched
>
>
> ./Configure -v
>
>
> make Everything >& everything.txt
>
> and I receive many errors.Many of that are resolved by the hints and by the
> Troubleshooting and known
> problems<http://www.ncl.ucar.edu/Download/build_from_src.shtml#Troubleshooting>
> <http://www.ncl.ucar.edu/Download/build_from_src.shtml#Troubleshooting>in
> the ncl site.I ve get also a problem with the file nclhdf.c that I've fixed
> with the patch I've found in this link
>
> http://www.redhat.com/archives/fedora-extras-commits/2008-February/msg11504.html
>
>
> But now I've get the last and only error in the file nclnetcdf.c file
>
>
> NclNetCdf.c(738): error: identifier "NC_64BIT_OFFSET" is undefined
>
> mode = (NC_NOCLOBBER|NC_64BIT_OFFSET);
>
> ^
>
> .......
>
> .......
>
>
> compilation aborted for NclNetCdf.c (code 2)
>
> make[4]: *** [NclNetCdf.o] Error 2
>
>
>
>
> And the building of ncl/ncarg going failure.
>
>
> How can I resolve this problem?
>
> If you need some other log file I can send it to you.
>
> Thank You so much.
>
>
> Have a nice day
>
>
>
> Cucco Fabrizio
>
> Ancona University
>

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Received on Wed Apr 30 2008 - 08:38:02 MDT