Re: ng4ex gsun01n fails with segmentation fault on gentoo x86

Yes, it shows a plot. Here is a snapshot: http://pier.unirc.eu/cestino/snapshot.png Pier --- Mar 20/4/10, Mary Haley <haley_at_ucar.edu> ha scritto: > Da: Mary Haley <haley_at_ucar.edu> > Oggetto: Re: [ncl-install] ng4ex gsun01n fails with segmentation fault on gentoo x86 > A: "Pierpaolo Garofalo" <pier_carla_at_yahoo.it> > Data: Martedì 20 Aprile 2010, 22:56 > > On Apr 20, 2010, at 9:21 AM, Pierpaolo Garofalo wrote: > > > Mary, > > I checked the command ctrans again this time clicking > on the empty  > > black window. This is the error message: > > > > ctrans -d X11 gsun02n.ncgm > > ctrans: FATAL - Premature end of metafile > > NCAR Graphics Fortran  Example <agex01> > > > > > > Instead the command: > > > > > > ncargex -w x11 agex01 -clean > > > > returned a white graph on a black window. The terminal > message this  > > time was: > > > > NOTE: This example is being run interactively and can > only > >       be executed if you have > X running and have your > >       DISPLAY environment > variable set properly.  It will > >       create an X11 window > that you must click on with your > >       mouse to advance the > frame(s). > > > >   Copying agex01.f > > > > Compiling and linking... > > gfortran -fPIC -fno-second-underscore -fno-range-check > -O -o agex01  > > agex01.f -L/home/pier/Programmi/WRF/SW/ncarg/lib > -L/usr/X11R6/lib - > > L/usr/lib/gcc/1-pc-1-gnu/4.3.4 > -L/home/pier/Programmi/WRF/lib - > > lncarg -lncarg_gks -lncarg_c -lX11 -lXext > > > /usr/lib/gcc/i686-pc-linux-gnu/4.3.4/../../../../i686-pc-linux-gnu/ > > > bin/ld: warning: creating a DT_TEXTREL in object. > > > > Executing <agex01>... > > > >  agex01.. > > > > > > The window disappeared as soon as I clicked on it but > without any  > > error message. > > Did it show an XY plot before it disappeared?  If so, > then this is  > the correct behavior. > > --Mary > > > > > Regards, > > Pier > > > > > > > > > > --- Mar 20/4/10, Mary Haley <haley_at_ucar.edu> > ha scritto: > > > >> Da: Mary Haley <haley_at_ucar.edu> > >> Oggetto: Re: [ncl-install] ng4ex gsun01n fails > with segmentation  > >> fault on gentoo x86 > >> A: "Pierpaolo Garofalo" <pier_carla_at_yahoo.it> > >> Data: Martedì 20 Aprile 2010, 00:47 > >> Pier, > >> > >> Thanks for sending the files, Everything seems to > look > >> okay. > >> > >> Can you try a more simple example? I need to see > if this is > >> an issue with "ncl" or some low-level code. > >> > >> Try this: > >> > >> ncargex -w x11 agex01 -clean > >> > >> As for the libxxxx.so problems, did you try > downloading a > >> non-OPeNDAP-enabled binary? These binaries don't > have those > >> dependencies. > >> > >> For the NCGM test you did below: when you run > "ctrans -d > >> X11 file.ncgm", it will pop up a window, but you > may need to > >> click > >> on that window with your left mouse button to > advance the > >> frame and close it. > >> > >> > >> --Mary > >> > >> > >> On Apr 19, 2010, at 1:11 PM, Pierpaolo Garofalo > wrote: > >> > >>> Mary, > >>> thank you very much for your prompt reply. > >>> > >>> I tried and compiled both 5.1.0 and 5.2.0 but > the > >> graphic tests on gsunxxn files always fail with > the same > >> error message. > >>> > >>> Versions 5.1.0 and 5.2.0 from binaries work > well (so > >> you might be righteous asking why I am bothering > the mailing > >> list with the compiling from source not working > matter... > >> fact is that I started from the source code and I > am a bit > >> disappointed about this hitch) with a difference > though, > >> version 5.2.0 from binaries complains with > warning > >> messages: > >>> > >>> ncl: /usr/lib/libcrypto.so.0.9.8: no version > >> information available (required by ncl) > >>> ncl: /usr/lib/libssl.so.0.9.8: no version > information > >> available (required by ncl) > >>> > >>> (I realized that when asking the script from a > tcl-tk > >> script which prevented its normal running on > account of the > >> above warnings. In order to get the ncl script to > do its job > >> I had to redirect the error output to /dev/null, > so that > >> this is not much of a hassle) > >>> > >>> The output of ldd returns: > >>> > >>> ldd $(which ncl) > >>> /home/pier/Programmi/WRF/bin/ncl: > >> /usr/lib/libcrypto.so.0.9.8: no version > information > >> available (required by > /home/pier/Programmi/WRF/bin/ncl) > >>> /home/pier/Programmi/WRF/bin/ncl: > >> /usr/lib/libssl.so.0.9.8: no version information > available > >> (required by /home/pier/Programmi/WRF/bin/ncl) > >>>          > linux-gate.so.1 > >> =>  (0xffffe000) > >>> > >>    libcrypto.so.0.9.8 => > >> /usr/lib/libcrypto.so.0.9.8 (0xb7e76000) > >>>          > libssl.so.0.9.8 > >> => /usr/lib/libssl.so.0.9.8 (0xb7e2d000) > >>>          librt.so.1 > => > >> /lib/librt.so.1 (0xb7e24000) > >>>          libX11.so.6 > >> => /usr/lib/libX11.so.6 (0xb7d0d000) > >>>          > libXext.so.6 > >> => /usr/lib/libXext.so.6 (0xb7cfd000) > >>>          libm.so.6 > => > >> /lib/libm.so.6 (0xb7cd6000) > >>>          libdl.so.2 > => > >> /lib/libdl.so.2 (0xb7cd2000) > >>>          > libstdc++.so.6 > >> => > /usr/lib/gcc/i686-pc-linux-gnu/4.3.4/libstdc++.so.6 > >> (0xb7be6000) > >>>          > libgcc_s.so.1 > >> => > /usr/lib/gcc/i686-pc-linux-gnu/4.3.4/libgcc_s.so.1 > >> (0xb7bd8000) > >>>          libc.so.6 > => > >> /lib/libc.so.6 (0xb7a94000) > >>>          > libpthread.so.0 > >> => /lib/libpthread.so.0 (0xb7a7a000) > >>>          libz.so.1 > => > >> /home/pier/Programmi/WRF/lib/libz.so.1 > (0xb7a65000) > >>> > >>    /lib/ld-linux.so.2 (0xb7fd9000) > >>>          libxcb.so.1 > >> => /usr/lib/libxcb.so.1 (0xb7a4a000) > >>>          libXau.so.6 > >> => /usr/lib/libXau.so.6 (0xb7a46000) > >>>          > libXdmcp.so.6 > >> => /usr/lib/libXdmcp.so.6 (0xb7a40000) > >>> > >>> > >>> I put make-output and LINUX files here: > >>> > >>> > >>> http://pier.unirc.eu/cestino/LINUX > >>> http://pier.unirc.eu/cestino/make-output.gz > >>> > >>> > >>> Regards, > >>> Pier > >>> > >>> > >> > ----------------------------------------------------------------- > >>> .../\ /\ > >>> ....0 0 > >>> ....=O= > >>> <  Pierp  > > >>> > >> > ----------------------------------------------------------------- > >>> Linux Gentoo Ker. 2.6.22/Ker. 2.6.19.2 RTAI > Vulcano > >>> Web: http://pier.unirc.eu > >>> msn: pier_port at hotmail dot com > >>> irc: irc.unirc.eu #linux > >>> icq: 325474062 > >>> > >> > ----------------------------------------------------------------- > >>> "Absolutely nothing should be concluded from > these > >> figures except that no conclusion can be drawn > from them." > >>> > >> > ----------------------------------------------------------------- > >>> > >>> > >>> --- Lun 19/4/10, Mary Haley <haley_at_ucar.edu> > >> ha scritto: > >>> > >>>> Da: Mary Haley <haley_at_ucar.edu> > >>>> Oggetto: Re: [ncl-install] ng4ex gsun01n > fails > >> with segmentation fault on gentoo x86 > >>>> A: "Pierpaolo Garofalo" <pier_carla_at_yahoo.it> > >>>> Cc: ncl-install_at_ucar.edu > >>>> Data: Lunedì 19 Aprile 2010, 16:13 > >>>> Pier, > >>>> > >>>> You are running a rather old version of > NCL. > >> You > >>>> might want to consider upgrading. > >>>> > >>>> Did you install NCL from source code or > from a > >> precompiled > >>>> binary? > >>>> > >>>> If you installed from source code, then > there > >> might be a > >>>> problem with the configuration setup. > >>>> > >>>> If you installed from a binary, then I > suggest > >> upgrading to > >>>> NCL 5.2.0: > >>>> > >>>> http://www.ncl.ucar.edu/Download/ > >>>> > >>>> If you installed from source code, I > still > >> recommend > >>>> upgrading, but we'll need to figure > >>>> out if your configuration is > correct.  Can > >> you send me > >>>> the $NCARG/config/LINUX file > >>>> you used, and your "make-output" file? > >>>> > >>>> --Mary > >>>> > >>>> On Apr 17, 2010, at 2:07 AM, Pierpaolo > Garofalo > >> wrote: > >>>> > >>>>> Hi all, > >>>>> I have managed to successfully compile > and > >> install ncl > >>>> on a couple of quad core x86_64 gentoo > machines. > >>>> Nevertheless there must be something wrong > when I > >> do the > >>>> same on a Macbook Santarosa with x86 > gentoo when > >> preparing > >>>> for wrf-3.2. > >>>>> > >>>>> I realize that ncl is not properly > working on > >> this > >>>> latter machine . > >>>>> > >>>>> I have just been using it with a very > simple > >> script > >>>> aimed to extract de-staggered data from > wrf-3.2 > >> wrfout > >>>> files. As a matter of fact the script > below does > >> its job > >>>> well: > >>>>> > >>>>> > >>>> > >> > ------------------------------------------------------------ > >>>>> load > >>>> > >> > "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl" > >>>>> load > >>>> > >> > "$NCARG_ROOT/lib/ncarg/nclscripts/wrf/WRFUserARW.ncl" > >>>>> > >>>>> begin > >>>>> > >>>>>       a = > >> addfile("wrfout.nc","r") > >>>>> > >>>>>       U = > >>>> wrf_user_getvar(a,"ua",-1) > >>>>> > >>>>>    >    asciiwrite("U.tmp",U) > >>>>> > >>>>>       V = > >>>> wrf_user_getvar(a,"va",-1) > >>>>> > >>>>>    >    asciiwrite("V.tmp",V) > >>>>> > >>>>> end > >>>>> > >>>>> > >>>> > >> > ------------------------------------------------------------ > >>>>> > >>>>> whereas the graphics doesn't seem to > work: > >>>>> > >>>>> ng4ex gsun01n > >>>>> > >>>>> gives a quick flash of a white window > opening > >> and > >>>> suddenly closing in less than a tick. > >>>>> > >>>>> I did the following to investigate: > >>>>> > >>>>> 1) ulimit -s unlimited > >>>>> > >>>>> the white window persisted for several > seconds > >> before > >>>> closing and giving back the same error > message: > >>>>> > >>>>> > >>>> > >> > ------------------------------------------------------- > >>>>> ng4ex gsun01n > >>>>> > >>>>> NCAR Graphics NCL Example > <gsun01n> > >>>>> > >>>>> > >>>>> This example was set up to display the > output > >> to an > >>>>> X11 window. > >>>>> > >>>>>     Copying > gsun01n.ncl > >>>>> > >>>>> Running NCL... > >>>>> Copyright (C) 1995-2009 - All Rights > Reserved > >>>>> University Corporation for > Atmospheric > >> Research > >>>>> NCAR Command Language Version 5.1.0 > >>>>> The use of this software is governed > by a > >> License > >>>> Agreement. > >>>>> See http://www.ncl.ucar.edu/ for more > >> details. > >>>>> Segmentation fault > >>>>> > >>>>> ncl failed. > >>>>> > >>>>> > >>>> > >> > ------------------------------------------------------- > >>>>> > >>>>> 2) I altered  gsun01n.ncl > swapping X11 > >> with ncgm > >>>> but I got the same error message again. > >> gsun01n.ncgm was > >>>> created but > >>>>> > >>>>> ctrans -d X11 gsun01n.ncgm > >>>>> > >>>>> showed a black empty window this > time. > >>>>> > >>>>> 3) In order to investigate further I > gave the > >>>> command: > >>>>> > >>>>> strace ng4ex gsun01n &> > log.err > >>>>> > >>>>> whose output is available here: > >>>>> > >>>>> http://pier.unirc.eu/cestino/log.err > >>>>> > >>>>> 4) As a last resort I tried to switch > from > >> intel to > >>>> vesa xorg driver but that too didn't > avail. > >>>>> > >>>>> I would like to point out that: > >>>>> a) I am able to use idt as well as > ncview.; > >>>>> b) compilation was performed by using > gcc > >> 4.3.4 and > >>>> gfortran; > >>>>> c) Kernel is gentoo-2.6.30. > >>>>> > >>>>> Any hint on how to solve this would > be > >> greatly > >>>> appreciated. > >>>>> Regards, > >>>>> Pier > >>>>> > >>>>> > ------------------------------------------ > >>>>> Pierpaolo Garofalo > >>>>> Dipartimento di Ingegneria Energetica > >>>>> Università Politecnica delle Marche > >>>>> > >>>>> > >>>>> > >>>>> > >>>>> > >>>>> > >> _______________________________________________ > >>>>> ncl-install mailing list > >>>>> List instructions, subscriber > options, > >> unsubscribe: > >>>>> http://mailman.ucar.edu/mailman/listinfo/ncl-install > >>>> > >>>> > >>> > >>> > >>> > >> > >> > > > > > > > >
Received on Wed Apr 21 01:35:21 2010