Re: ng4ex gsun01n fails with segmentation fault on gentoo x86

Mary, I checked the command ctrans again this time clicking on the empty black window. This is the error message: ctrans -d X11 gsun02n.ncgm ctrans: FATAL - Premature end of metafile NCAR Graphics Fortran Example <agex01> Instead the command: ncargex -w x11 agex01 -clean returned a white graph on a black window. The terminal message this time was: NOTE: This example is being run interactively and can only be executed if you have X running and have your DISPLAY environment variable set properly. It will create an X11 window that you must click on with your mouse to advance the frame(s). Copying agex01.f Compiling and linking... gfortran -fPIC -fno-second-underscore -fno-range-check -O -o agex01 agex01.f -L/home/pier/Programmi/WRF/SW/ncarg/lib -L/usr/X11R6/lib -L/usr/lib/gcc/1-pc-1-gnu/4.3.4 -L/home/pier/Programmi/WRF/lib -lncarg -lncarg_gks -lncarg_c -lX11 -lXext /usr/lib/gcc/i686-pc-linux-gnu/4.3.4/../../../../i686-pc-linux-gnu/bin/ld: warning: creating a DT_TEXTREL in object. Executing <agex01>... agex01.. The window disappeared as soon as I clicked on it but without any error message. Regards, Pier --- Mar 20/4/10, Mary Haley <haley_at_ucar.edu> ha scritto: > Da: Mary Haley <haley_at_ucar.edu> > Oggetto: Re: [ncl-install] ng4ex gsun01n fails with segmentation fault on gentoo x86 > A: "Pierpaolo Garofalo" <pier_carla_at_yahoo.it> > Data: Martedì 20 Aprile 2010, 00:47 > Pier, > > Thanks for sending the files, Everything seems to look > okay. > > Can you try a more simple example? I need to see if this is > an issue with "ncl" or some low-level code. > > Try this: > > ncargex -w x11 agex01 -clean > > As for the libxxxx.so problems, did you try downloading a > non-OPeNDAP-enabled binary? These binaries don't have those > dependencies. > > For the NCGM test you did below: when you run "ctrans -d > X11 file.ncgm", it will pop up a window, but you may need to > click > on that window with your left mouse button to advance the > frame and close it. > > > --Mary > > > On Apr 19, 2010, at 1:11 PM, Pierpaolo Garofalo wrote: > > > Mary, > > thank you very much for your prompt reply. > > > > I tried and compiled both 5.1.0 and 5.2.0 but the > graphic tests on gsunxxn files always fail with the same > error message. > > > > Versions 5.1.0 and 5.2.0 from binaries work well (so > you might be righteous asking why I am bothering the mailing > list with the compiling from source not working matter... > fact is that I started from the source code and I am a bit > disappointed about this hitch) with a difference though, > version 5.2.0 from binaries complains with warning > messages: > > > > ncl: /usr/lib/libcrypto.so.0.9.8: no version > information available (required by ncl) > > ncl: /usr/lib/libssl.so.0.9.8: no version information > available (required by ncl) > > > > (I realized that when asking the script from a tcl-tk > script which prevented its normal running on account of the > above warnings. In order to get the ncl script to do its job > I had to redirect the error output to /dev/null, so that > this is not much of a hassle) > > > > The output of ldd returns: > > > > ldd $(which ncl) > > /home/pier/Programmi/WRF/bin/ncl: > /usr/lib/libcrypto.so.0.9.8: no version information > available (required by /home/pier/Programmi/WRF/bin/ncl) > > /home/pier/Programmi/WRF/bin/ncl: > /usr/lib/libssl.so.0.9.8: no version information available > (required by /home/pier/Programmi/WRF/bin/ncl) > >         linux-gate.so.1 > =>  (0xffffe000) > >      >    libcrypto.so.0.9.8 => > /usr/lib/libcrypto.so.0.9.8 (0xb7e76000) > >         libssl.so.0.9.8 > => /usr/lib/libssl.so.0.9.8 (0xb7e2d000) > >         librt.so.1 => > /lib/librt.so.1 (0xb7e24000) > >         libX11.so.6 > => /usr/lib/libX11.so.6 (0xb7d0d000) > >         libXext.so.6 > => /usr/lib/libXext.so.6 (0xb7cfd000) > >         libm.so.6 => > /lib/libm.so.6 (0xb7cd6000) > >         libdl.so.2 => > /lib/libdl.so.2 (0xb7cd2000) > >         libstdc++.so.6 > => /usr/lib/gcc/i686-pc-linux-gnu/4.3.4/libstdc++.so.6 > (0xb7be6000) > >         libgcc_s.so.1 > => /usr/lib/gcc/i686-pc-linux-gnu/4.3.4/libgcc_s.so.1 > (0xb7bd8000) > >         libc.so.6 => > /lib/libc.so.6 (0xb7a94000) > >         libpthread.so.0 > => /lib/libpthread.so.0 (0xb7a7a000) > >         libz.so.1 => > /home/pier/Programmi/WRF/lib/libz.so.1 (0xb7a65000) > >      >    /lib/ld-linux.so.2 (0xb7fd9000) > >         libxcb.so.1 > => /usr/lib/libxcb.so.1 (0xb7a4a000) > >         libXau.so.6 > => /usr/lib/libXau.so.6 (0xb7a46000) > >         libXdmcp.so.6 > => /usr/lib/libXdmcp.so.6 (0xb7a40000) > > > > > > I put make-output and LINUX files here: > > > > > > http://pier.unirc.eu/cestino/LINUX > > http://pier.unirc.eu/cestino/make-output.gz > > > > > > Regards, > > Pier > > > > > ----------------------------------------------------------------- > > .../\ /\ > > ....0 0 > > ....=O= > > <  Pierp  > > > > ----------------------------------------------------------------- > > Linux Gentoo Ker. 2.6.22/Ker. 2.6.19.2 RTAI Vulcano > > Web: http://pier.unirc.eu > > msn: pier_port at hotmail dot com > > irc: irc.unirc.eu #linux > > icq: 325474062 > > > ----------------------------------------------------------------- > > "Absolutely nothing should be concluded from these > figures except that no conclusion can be drawn from them." > > > ----------------------------------------------------------------- > > > > > > --- Lun 19/4/10, Mary Haley <haley_at_ucar.edu> > ha scritto: > > > >> Da: Mary Haley <haley_at_ucar.edu> > >> Oggetto: Re: [ncl-install] ng4ex gsun01n fails > with segmentation fault on gentoo x86 > >> A: "Pierpaolo Garofalo" <pier_carla_at_yahoo.it> > >> Cc: ncl-install_at_ucar.edu > >> Data: Lunedì 19 Aprile 2010, 16:13 > >> Pier, > >> > >> You are running a rather old version of NCL.  > You > >> might want to consider upgrading. > >> > >> Did you install NCL from source code or from a > precompiled > >> binary? > >> > >> If you installed from source code, then there > might be a > >> problem with the configuration setup. > >> > >> If you installed from a binary, then I suggest > upgrading to > >> NCL 5.2.0: > >> > >> http://www.ncl.ucar.edu/Download/ > >> > >> If you installed from source code, I still > recommend > >> upgrading, but we'll need to figure > >> out if your configuration is correct.  Can > you send me > >> the $NCARG/config/LINUX file > >> you used, and your "make-output" file? > >> > >> --Mary > >> > >> On Apr 17, 2010, at 2:07 AM, Pierpaolo Garofalo > wrote: > >> > >>> Hi all, > >>> I have managed to successfully compile and > install ncl > >> on a couple of quad core x86_64 gentoo machines. > >> Nevertheless there must be something wrong when I > do the > >> same on a Macbook Santarosa with x86 gentoo when > preparing > >> for wrf-3.2. > >>> > >>> I realize that ncl is not properly working on > this > >> latter machine . > >>> > >>> I have just been using it with a very simple > script > >> aimed to extract de-staggered data from wrf-3.2 > wrfout > >> files. As a matter of fact the script below does > its job > >> well: > >>> > >>> > >> > ------------------------------------------------------------ > >>> load > >> > "$NCARG_ROOT/lib/ncarg/nclscripts/csm/gsn_code.ncl" > >>> load > >> > "$NCARG_ROOT/lib/ncarg/nclscripts/wrf/WRFUserARW.ncl" > >>> > >>> begin > >>> > >>>      a = > addfile("wrfout.nc","r") > >>> > >>>      U = > >> wrf_user_getvar(a,"ua",-1) > >>> > >>>      asciiwrite("U.tmp",U) > >>> > >>>      V = > >> wrf_user_getvar(a,"va",-1) > >>> > >>>      asciiwrite("V.tmp",V) > >>> > >>> end > >>> > >>> > >> > ------------------------------------------------------------ > >>> > >>> whereas the graphics doesn't seem to work: > >>> > >>> ng4ex gsun01n > >>> > >>> gives a quick flash of a white window opening > and > >> suddenly closing in less than a tick. > >>> > >>> I did the following to investigate: > >>> > >>> 1) ulimit -s unlimited > >>> > >>> the white window persisted for several seconds > before > >> closing and giving back the same error message: > >>> > >>> > >> > ------------------------------------------------------- > >>> ng4ex gsun01n > >>> > >>> NCAR Graphics NCL Example <gsun01n> > >>> > >>> > >>> This example was set up to display the output > to an > >>> X11 window. > >>> > >>>    Copying gsun01n.ncl > >>> > >>> Running NCL... > >>> Copyright (C) 1995-2009 - All Rights Reserved > >>> University Corporation for Atmospheric > Research > >>> NCAR Command Language Version 5.1.0 > >>> The use of this software is governed by a > License > >> Agreement. > >>> See http://www.ncl.ucar.edu/ for more > details. > >>> Segmentation fault > >>> > >>> ncl failed. > >>> > >>> > >> > ------------------------------------------------------- > >>> > >>> 2) I altered  gsun01n.ncl swapping X11 > with ncgm > >> but I got the same error message again. > gsun01n.ncgm was > >> created but > >>> > >>> ctrans -d X11 gsun01n.ncgm > >>> > >>> showed a black empty window this time. > >>> > >>> 3) In order to investigate further I gave the > >> command: > >>> > >>> strace ng4ex gsun01n &> log.err > >>> > >>> whose output is available here: > >>> > >>> http://pier.unirc.eu/cestino/log.err > >>> > >>> 4) As a last resort I tried to switch from > intel to > >> vesa xorg driver but that too didn't avail. > >>> > >>> I would like to point out that: > >>> a) I am able to use idt as well as ncview.; > >>> b) compilation was performed by using gcc > 4.3.4 and > >> gfortran; > >>> c) Kernel is gentoo-2.6.30. > >>> > >>> Any hint on how to solve this would be > greatly > >> appreciated. > >>> Regards, > >>> Pier > >>> > >>> ------------------------------------------ > >>> Pierpaolo Garofalo > >>> Dipartimento di Ingegneria Energetica > >>> Università Politecnica delle Marche > >>> > >>> > >>> > >>> > >>> > >>> > _______________________________________________ > >>> ncl-install mailing list > >>> List instructions, subscriber options, > unsubscribe: > >>> http://mailman.ucar.edu/mailman/listinfo/ncl-install > >> > >> > > > > > > > >
Received on Tue Apr 20 09:22:32 2010