Re: addfile and HDF5 library version mismatch

Mark,

How did you unset these variables?

Can you provide the HDF5 file you're using, so I can try the exact same file on the same binary that you're using?

If you can provide the file, then you can use our ftp site. For instructions on ftp:

http://www.ncl.ucar.edu/report_bug.shtml

--Mary

On Feb 6, 2012, at 3:48 PM, Mark Waylonis wrote:

> I unset all the variables, but still get the same error.
>
> Mark
>
> On Feb 6, 2012, at 2:20 PM, Mark Waylonis wrote:
>
>> I have the following HDF environmental variables set:
>>
>> HDF4_ROOT=/admin/software/lucid/pgi-10.9/hdf4-4.2.5
>> HDF5_LIB_DIR=/admin/software/lucid/pgi-10.9/hdf5-1.8.5-patch1/lib
>> HDF5_ROOT=/admin/software/lucid/pgi-10.9/hdf5-1.8.5-patch1
>>
>>
>> Mark
>>
>> On Feb 6, 2012, at 7:49 AM, Mary Haley wrote:
>>
>>> Hi Mark,
>>>
>>> I was able to reproduce this error awhile back with the RedHat binaries, but not with the Debian binaries.
>>>
>>> Do you have any HDF environment variables set by any chance?
>>>
>>> env | grep HDF
>>>
>>> --Mary
>>>
>>>
>>> On Feb 3, 2012, at 5:21 PM, Mark Waylonis wrote:
>>>
>>>> I am getting the same problem when using addfile for an '.h5' file. I checked LD_LIBRARY_PATH, and the environmental variable is set correctly. I am running ncl_ncarg-6.0.0.Linux_Debian_x86_64_nodap_gcc432. Anyone have any ideas?
>>>>
>>>> Warning! ***HDF5 library version mismatched error***
>>>> The HDF5 header files used to compile this application do not match
>>>> the version used by the HDF5 library to which this application is linked.
>>>> Data corruption or segmentation faults may occur if the application continues.
>>>> This can happen when an application was compiled by one version of HDF5 but
>>>> linked with a different version of static or shared HDF5 library.
>>>> You should recompile the application or check your shared library related
>>>> settings such as 'LD_LIBRARY_PATH'.
>>>> You can, at your own risk, disable this warning by setting the environment
>>>> variable 'HDF5_DISABLE_VERSION_CHECK' to a value of '1'.
>>>> Setting it to 2 or higher will suppress the warning messages totally.
>>>>
>>>> Thank you!
>>>>
>>>>
>>>> _____________________________
>>>> Mark Waylonis
>>>> Graduate Student Researcher
>>>> University of California, Davis
>>>> Atmospheric Science Graduate Group
>>>> _____________________________
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
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>>>
>>
>
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Received on Tue Feb 7 15:03:32 2012