Re: ESMF_RegridWeightGen not found

Hi Mary,

Thanks for the response. Note that I get this same error both on the
Macports build, and on the linux version. I'm waiting to hear from Jenny
which version of the linux binary she installed -- it is possible that
there is a mismatch between the version of gcc on the linux machine and
the one used in the binary that was installed. But this issue will still
need to be resolved for the Mac -- I searched both machines, and neither
of them have "libgfortran.so.3".

Thanks for your patience on this!
Sean

On 1/3/14 11:13 AM, Mary Haley wrote:
> Hi Sean,
>
> Whenever the ESMF_RegridWeightGen binary gets built, it includes a reference to the gfortran shared library, "libgfortran.so". When there's a reference like this, it means that you need to have "libgfortran.so" installed somewhere on your system, *and* it should be a version close or identical to what the binary was built with. I'm surprised it's complaining about "libgfortran.so.3" and not "libgfortran.3.dylib", but that may be due to your version of MacOS.
>
> You can use your Mac Finder to see if you already have "libgfortran.so.3" installed on your system. If you do, then you set the DYLD_LIBRARY_PATH environment variable to point to the directory that has this file. Note that is usually recommended *not* to set this environment variable, because if it was installed in a "standard" location like /usr/local, then it should be found automatically.
>
> If you don't have this library on your system, then you may need to use macports or HPC to install gfortran 4.5 or higher, which I think we used to compile this ESMF_RegridWeightGen binary.
>
> --Mary
>
>
> On Jan 2, 2014, at 3:49 PM, Sean Davis - NOAA Affiliate <sean.m.davis@noaa.gov> wrote:
>
>> Hi Mary,
>>
>> I'm not sure if this is more appropriate to troubleshoot on the list or not, but I wanted to follow up with the EMSF grid issue I've been having.
>>
>> I am able to get ESMF_RegridWeightGen to be recognized using the procedure you outlined below, but now I am getting a different error. I was worried that this was related to the use of a Macports version of NCL on the Mac, but I actually get the same error on our linux machine, which used the opendap-enabled binary.
>>
>> I looked into the ESMF_regridding.ncl file, but I don't see anything related to the "ismissing" function on the line that is referenced (line 2291 or 3166). Do you have an idea of what might be happening here with the fortran libraries? I'm cc'ing Jenny Fox, the admin of the Linux machine, in case she might have any ideas.
>>
>> Thanks!
>>
>> Sean
>>
>> [sdavis@marvin scripts]$ ncl convert_ncep.ncl
>> Copyright (C) 1995-2013 - All Rights Reserved
>> University Corporation for Atmospheric Research
>> NCAR Command Language Version 6.1.2
>> The use of this software is governed by a License Agreement.
>> See http://www.ncl.ucar.edu/ for more details.
>> (0) Reading /home/sdavis/air.mon.mean.nc
>>
>> Variable: Opt
>> Type: logical
>> Total Size: 4 bytes
>> 1 values
>> Number of Dimensions: 1
>> Dimensions and sizes: [1]
>> Coordinates:
>> Number Of Attributes: 5
>> DstForceOverwrite : True
>> SrcForceOverwrite : True
>> CopyVarAtts : False
>> DstGridLon : <ARRAY of 144 elements>
>> DstGridLat : <ARRAY of 73 elements>
>> ESMF_RegridWeightGen: error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory
>> fatal:The result of the conditional expression yields a missing value. NCL can not determine branch, see ismissing function
>> fatal:["Execute.c":8128]:Execute: Error occurred at or near line 2291 in file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl
>>
>> fatal:["Execute.c":8128]:Execute: Error occurred at or near line 3166 in file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl
>>
>> fatal:["Execute.c":8128]:Execute: Error occurred at or near line 81 in file convert_ncep.ncl
>>
>> fatal:["Execute.c":8128]:Execute: Error occurred at or near line 193 in file convert_ncep.ncl
>>
>>
>>
>>
>> On 12/27/13 1:26 PM, Mary Haley wrote:
>>> Hi Sean,
>>>
>>> As we discussed offline, if you downloaded the "ncl_ncarg-6.1.2.MacOS_10.6_64bit_gcc460.tar.gz" binary from the www.earthsystemgrid.org website, then you should have "ESMF_RegridWeightGen" already.
>>>
>>> If you are not seeing this file:
>>>
>>> ls $NCARG_ROOT/bin/ESMF_RegridWeightGen
>>>
>>> then one of the three things might be the reason:
>>>
>>> 1. NCARG_ROOT is not set to the correct parent directory
>>> 2. NCL was not installed from the "ncl_ncarg-6.1.2.MacOS_10.6_64bit_gcc460.tar.gz" tar file, but rather from source code. ESMF_RegridWeightGen is not part of our software stack and has to be built separately.
>>>
>>> 3. The special (and not widely known) "ESMFBINDIR" environment variable is set, but doesn't contain this executable.
>>>
>>> In any case, I have provided the "ESMF_RegridWeightGen" binary for MacOS 10.6 on our ftp:
>>>
>>> ftp ftp.ucar.edu
>>> <log in as "anonymous">
>>> <Use email address as password>
>>> cd /pub/scd/haley
>>> get ESMF_RegridWeightGen
>>> quit
>>>
>>> --Mary
>>>
>>> On Dec 27, 2013, at 1:13 PM, Sean Davis - NOAA Affiliate <sean.m.davis@noaa.gov> wrote:
>>>
>>>> Hi,
>>>>
>>>> I'm having a problem with ESMF_regrid which seems to be that the unix
>>>> command ESMF_RegridWeightGen is not found. To make the problem easy to
>>>> illustrate, I adapted Example 1 from the ESMF_regrid() documentation,
>>>> and used the file air.mon.ltm.nc from the NCEP/NCAR reanalysis. I
>>>> uploaded the .nc file to the CGD ftp site given on the webpage.
>>>>
>>>> Here is the example script....
>>>>
>>>> Fri Dec 27 12:33:25 sif scripts> more ex1.ncl
>>>> load "$NCARG_ROOT/lib/ncarg/nclscripts/csm/contributed.ncl"
>>>> load "$NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl"
>>>>
>>>> begin
>>>> infile =
>>>> "/Users/sdavis/sd-data/ncep/ncep.reanalysis.derived/pressure/air.mon.ltm.nc"
>>>>
>>>> sfile = addfile(infile,"r")
>>>> temp = sfile->air(0,0,:,:)
>>>>
>>>> Opt = True
>>>>
>>>> Opt@SrcFileName = "src_SCRIP.nc"
>>>> Opt@DstFileName = "dst_SCRIP.nc"
>>>> Opt@WgtFileName = "NCEP_2_Rect.nc"
>>>> Opt@ForceOverwrite = True
>>>>
>>>> Opt@SrcMask2D = where(.not.ismissing(temp),1,0)
>>>>
>>>> Opt@DstGridType = "5x5"
>>>> Opt@DstLLCorner = (/ -60.d, 0.d/)
>>>> Opt@DstURCorner = (/ 60.d, 355.d/)
>>>>
>>>> temp_regrid = ESMF_regrid(temp,Opt)
>>>> printVarSummary(temp_regrid)
>>>> end
>>>>
>>>> And here's what happens when I try to run it...
>>>>
>>>> Fri Dec 27 12:31:57 sif scripts> ncl ex1.ncl
>>>> Copyright (C) 1995-2013 - All Rights Reserved
>>>> University Corporation for Atmospheric Research
>>>> NCAR Command Language Version 6.1.2
>>>> The use of this software is governed by a License Agreement.
>>>> See http://www.ncl.ucar.edu/ for more details.
>>>> sh: ESMF_RegridWeightGen: command not found
>>>> fatal:The result of the conditional expression yields a missing value.
>>>> NCL can not determine branch, see ismissing function
>>>> fatal:["Execute.c":8128]:Execute: Error occurred at or near line 2291 in
>>>> file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl
>>>>
>>>> fatal:["Execute.c":8128]:Execute: Error occurred at or near line 3166 in
>>>> file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl
>>>>
>>>> fatal:["Execute.c":8128]:Execute: Error occurred at or near line 23 in
>>>> file ex1.ncl
>>>>
>>>> I'm running NCL on Mac OSX 10.6.8.
>>>>
>>>> Any ideas on what could be causing this problem?
>>>>
>>>> Thanks!!
>>>>
>>>> Sean
>>>>
>>>>
>>>> --
>>>> Sean Davis
>>>> NOAA ESRL Chemical Sciences Division
>>>> Mail Stop R/CSD-8
>>>> 325 S. Broadway
>>>> Boulder, CO 80305
>>>> Sean.M.Davis@noaa.gov
>>>> Office: 3A-122, DSRC
>>>> Phone: 303-497-4328
>>>> Fax: 303-497-5373
>>>> http://esrl.noaa.gov/csd/staff/sean.m.davis/
>>>> _______________________________________________
>>>> ncl-talk mailing list
>>>> List instructions, subscriber options, unsubscribe:
>>>> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
>> --
>> Sean Davis
>> NOAA ESRL Chemical Sciences Division
>> Mail Stop R/CSD-8
>> 325 S. Broadway
>> Boulder, CO 80305
>> Sean.M.Davis@noaa.gov
>> Office: 3A-122, DSRC
>> Phone: 303-497-4328
>> Fax: 303-497-5373
>> http://esrl.noaa.gov/csd/staff/sean.m.davis/
>>

--
Sean Davis
NOAA ESRL Chemical Sciences Division
Mail Stop R/CSD-8
325 S. Broadway
Boulder, CO 80305
Sean.M.Davis@noaa.gov
Office: 3A-122, DSRC
Phone: 303-497-4328
Fax: 303-497-5373
http://esrl.noaa.gov/csd/staff/sean.m.davis/


Received on Fri Jan 03 06:16:56 2014