Re: Error while accessing RANGS, please respond

From: Mary Haley <haley_at_nyahnyahspammersnyahnyah>
Date: Mon Dec 16 2013 - 12:43:02 MST

Hi Alberto,

It would have been helpful on our end if the internal code had echoed the path to the RANGS file. I'll see if we can get this remedied.

In the next release of NCL (this month or next), we will also hopefully fix the fontconfig error that some people are having.

--Mary

On Dec 16, 2013, at 12:32 PM, Alberto Mario Striedinger Pinilla <astriedinger@gmail.com> wrote:

> Mary,
>
> I feel very embarrassed for wasting your time. I didnt remember that line was there as I was suing the code in another computer and not mine in the very beginning.
>
> I just removed it and the plot came perfect, again with the fontconfig error but good.
>
> Thanks again for your kind assistance, I will make sure to change my code checking habits from now on. XD
>
> KInd reagrds,
> Alberto Striedinger
>
> Alberto M. Striedinger. P.
> Student Intern Researcher at MeteoConsult .NL.
> MSc. Sustainable Energy Technology
> Eindhoven University of Technology
> BSc.Mechanical Engineering
> Universidad del Norte & USF
> +31
>
>
>
>
> On Mon, Dec 16, 2013 at 8:24 PM, Mary Haley <haley@ucar.edu> wrote:
> Alberto,
>
> Thanks for providing the files offline.
>
> Did you know that you have an NCARG_RANGS setting inside your shell script?
>
> export NCARG_RANGS=/data/research/wrf/northseaUK/plot_scripts/ncl/rangs/
>
> This may be the source of your problem. This setting is going to override whatever
> you have NCARG_RANGS set to in your current UNIX shell.
>
> --Mary
>
> On Dec 16, 2013, at 11:37 AM, Alberto Mario Striedinger Pinilla <astriedinger@gmail.com> wrote:
>
> > I change the location of the RANGS to ~/Downloads/rangs
> > and set the environment variable $NCARG_RANGS =~/Downloads/rangs
> > But the error is the same, to that leads me to odds now.
> >
> > Alberto M. Striedinger. P.
> > Student Intern Researcher at MeteoConsult .NL.
> > MSc. Sustainable Energy Technology
> > Eindhoven University of Technology
> > BSc.Mechanical Engineering
> > Universidad del Norte & USF
> > +31
> >
> >
> >
> >
> > On Mon, Dec 16, 2013 at 6:14 PM, Alberto Mario Striedinger Pinilla <astriedinger@gmail.com> wrote:
> > Dear Karin , and Mary,
> >
> > Thank you very much for both responses. I still have the same issue. Once I write :
> > env | grep NCARG
> > ncargpath rangs
> >
> > I get : NCARG_ROOT=/usr/local/ncl-6.1.2
> > /usr/local/ncl-6.1.2/lib/ncarg/database/rangs
> >
> > Which are both correct as you stated.
> > ALso while doing the ll command (ls-l) I get the permissions as this :
> >
> >
> > alberto@alberto-ThinkPad-W520 /usr/local/ncl-6.1.2/lib/ncarg/database $ ll
> > total 15268
> > -rw-r--r-- 1 root root 239286 dec 15 17:21 Earth..1.areas
> > -rw-r--r-- 1 root root 743392 dec 15 17:21 Earth..1.lines
> > -rw-r--r-- 1 root root 30565 dec 15 17:21 Earth..1.names
> > -rw-r--r-- 1 root root 342556 dec 15 17:21 Earth..2.areas
> > -rw-r--r-- 1 root root 1502664 dec 15 17:21 Earth..2.lines
> > -rw-r--r-- 1 root root 103509 dec 15 17:21 Earth..2.names
> > -rw-r--r-- 1 root root 290424 dec 15 17:21 Earth..3.areas
> > -rw-r--r-- 1 root root 1035728 dec 15 17:21 Earth..3.lines
> > -rw-r--r-- 1 root root 38552 dec 15 17:21 Earth..3.names
> > -rw-r--r-- 1 root root 4901852 dec 15 17:21 Earth..4.areas
> > -rw-r--r-- 1 root root 4523568 dec 15 17:21 Earth..4.lines
> > -rw-r--r-- 1 root root 176764 dec 15 17:21 Earth..4.names
> > -rw-r--r-- 1 root root 36832 dec 15 17:21 ezmap_area_ids
> > -rw-r--r-- 1 root root 58979 dec 15 17:21 EzmapAreaInfo.CO
> > -rw-r--r-- 1 root root 122563 dec 15 17:21 EzmapAreaInfo.PO
> > -rw-r--r-- 1 root root 111767 dec 15 17:21 EzmapAreaInfo.PS
> > -rw-r--r-- 1 root root 9201 dec 15 17:21 EzmapAreaInfo.US
> > -rw-r--r-- 1 root root 587264 dec 15 17:21 ezmapdata
> > -rw-r--r-- 1 root root 76280 dec 15 17:21 EzmapOutlines.CO
> > -rw-r--r-- 1 root root 138680 dec 15 17:21 EzmapOutlines.PO
> > -rw-r--r-- 1 root root 240752 dec 15 17:21 EzmapOutlines.PS
> > -rw-r--r-- 1 root root 107952 dec 15 17:21 EzmapOutlines.US
> > drwxr-xr-x 2 root root 4096 dec 15 17:21 ftfonts/
> > -rw-r--r-- 1 root root 23021 dec 15 17:21 NhlMapData
> > -rw-r--r-- 1 root root 37640 dec 15 17:21 PlotcharData
> > -rw-r--r-- 1 root root 37680 dec 15 17:21 pwritdata
> > -rw-r--r-- 1 root root 20250 dec 15 17:21 ranfdata
> > drwxrwxr-x 2 alberto alberto 4096 dec 16 17:50 rangs/
> > -rw-r--r-- 1 root root 4096 dec 15 17:21 rgb.dir
> > -rw-r--r-- 1 root root 16384 dec 15 17:21 rgb.pag
> > -rw-r--r-- 1 root root 16992 dec 15 17:21 rgb.txt
> > ------------------
> >
> >
> > You can see my rangs/ has the same permissions as your, in addition my files inside the RANGS look like this :
> > alberto@alberto-ThinkPad-W520 /usr/local/ncl-6.1.2/lib/ncarg/database/rangs $ ll
> > total 137648
> > -rw-rw-rw- 1 alberto alberto 89496428 mei 13 1997 gshhs(0).rim
> > -rw-rw-rw- 1 alberto alberto 20775224 mei 13 1997 gshhs(1).rim
> > -rw-rw-rw- 1 alberto alberto 5099196 mei 13 1997 gshhs(2).rim
> > -rw-rw-rw- 1 alberto alberto 1109192 mei 13 1997 gshhs(3).rim
> > -rw-rw-rw- 1 alberto alberto 170948 mei 13 1997 gshhs(4).rim
> > -rw-rw-rw- 1 alberto alberto 259200 mei 6 1997 rangs(0).cat
> > -rw-rw-rw- 1 alberto alberto 6518664 feb 1 1999 rangs(0).cel
> > -rw-rw-rw- 1 alberto alberto 259200 mei 6 1997 rangs(1).cat
> > -rw-rw-rw- 1 alberto alberto 5945492 feb 1 1999 rangs(1).cel
> > -rw-rw-rw- 1 alberto alberto 259200 mei 6 1997 rangs(2).cat
> > -rw-rw-rw- 1 alberto alberto 4062215 feb 1 1999 rangs(2).cel
> > -rw-rw-rw- 1 alberto alberto 259200 mei 5 1997 rangs(3).cat
> > -rw-rw-rw- 1 alberto alberto 3398642 feb 1 1999 rangs(3).cel
> > -rw-rw-rw- 1 alberto alberto 259200 mei 5 1997 rangs(4).cat
> > -rw-rw-rw- 1 alberto alberto 3045848 jan 29 1999 rangs(4).cel
> >
> >
> > ..... Still like this, the error is still the same. I am thinking maybe my binaries are not ok ? My upper folder /usrl/local/ncl-6.1.2 is as root.... JUst in case here is how my upper directories look like :
> >
> > My $NCARG_ROOT/lib/ncarg looks like ==>
> >
> > alberto@alberto-ThinkPad-W520 /usr/local/ncl-6.1.2/lib/ncarg $ ll
> > total 84
> > drwxr-xr-x 2 root root 4096 dec 15 17:21 colormaps/
> > drwxr-xr-x 8 root root 4096 dec 15 17:21 data/
> > drwxr-xr-x 4 root root 4096 dec 15 17:21 database/
> > drwxr-xr-x 2 root root 12288 dec 15 17:21 examples/
> > drwxr-xr-x 2 root root 4096 dec 15 17:21 fontcaps/
> > drwxr-xr-x 2 root root 4096 dec 15 17:21 graphcaps/
> > drwxr-xr-x 5 root root 4096 dec 15 17:21 grib2_codetables/
> > drwxr-xr-x 5 root root 4096 dec 15 17:21 grib2_codetables.previous/
> > drwxr-xr-x 16 root root 4096 dec 15 17:21 hluex/
> > drwxr-xr-x 17 root root 4096 dec 15 17:21 nclex/
> > drwxr-xr-x 6 root root 4096 dec 15 17:21 nclscripts/
> > drwxr-xr-x 2 root root 4096 dec 15 17:21 ngwww/
> > drwxr-xr-x 17 root root 4096 dec 15 17:21 resfiles/
> > drwxr-xr-x 2 root root 4096 dec 15 17:21 robj/
> > -rw-rw-rw- 1 root root 1006 dec 15 17:21 sysresfile
> > drwxr-xr-x 2 root root 4096 dec 15 17:21 tests/
> > drwxr-xr-x 2 root root 4096 dec 15 17:21 tutorial/
> > drwxr-xr-x 2 root root 4096 dec 15 17:21 udunits/
> > drwxr-xr-x 2 root root 4096 dec 15 17:21 xapp/
> >
> >
> > My $NCARG_ROOT/lib looks like ==>>
> > alberto@alberto-ThinkPad-W520 /usr/local/ncl-6.1.2/lib $ ll
> > total 40916
> > -rw-rw-rw- 1 root root 580256 dec 15 17:21 libblas_ncl.a
> > -rw-rw-rw- 1 root root 63458 dec 15 17:21 libcgm.a
> > -rw-rw-rw- 1 root root 389998 dec 15 17:21 libfftpack5_dp.a
> > -rw-rw-rw- 1 root root 3806536 dec 15 17:21 libhlu.a
> > -rw-rw-rw- 1 root root 7790164 dec 15 17:21 liblapack_ncl.a
> > -rw-rw-rw- 1 root root 7776824 dec 15 17:21 libncarg.a
> > -rw-rw-rw- 1 root root 89936 dec 15 17:21 libncarg_c.a
> > -rw-rw-rw- 1 root root 2310930 dec 15 17:21 libncarg_gks.a
> > -rw-rw-rw- 1 root root 202986 dec 15 17:21 libncarg_ras.a
> > -rw-rw-rw- 1 root root 4719108 dec 15 17:21 libncl.a
> > -rw-rw-rw- 1 root root 4721446 dec 15 17:21 libnclapi.a
> > -rw-rw-rw- 1 root root 2939848 dec 15 17:21 libnfp.a
> > -rw-rw-rw- 1 root root 1236614 dec 15 17:21 libnfpfort.a
> > -rw-rw-rw- 1 root root 994134 dec 15 17:21 libngmath.a
> > -rw-rw-rw- 1 root root 3466078 dec 15 17:21 libnio.a
> > -rw-rw-rw- 1 root root 774542 dec 15 17:21 libsphere3.1_dp.a
> > drwxr-xr-x 20 root root 4096 dec 15 17:21 ncarg/
> >
> > Thank you again both for you diligence XD.
> >
> >
> > Alberto M. Striedinger. P.
> > Student Intern Researcher at MeteoConsult .NL.
> > MSc. Sustainable Energy Technology
> > Eindhoven University of Technology
> > BSc.Mechanical Engineering
> > Universidad del Norte & USF
> > +31
> >
> >
> >
> >
> > On Mon, Dec 16, 2013 at 4:51 PM, Mary Haley <haley@ucar.edu> wrote:
> > Hi Alberto,
> >
> > Thanks to Karin for her help on this. It looks like you are doing everything correctly with regard to the RANGS files.
> > Karin is right that you don't need NCARG_RANGS if you have installed the files in $NCARG_ROOT/lib/ncarg/database/rangs,
> > but it shouldn't hurt if you are setting this.
> >
> > The error seems to imply that it simply cannot open the file, either because the permissions are wrong, or the file isn't there.
> >
> > Can you make sure you have the correct read permissions on the directory itself:
> >
> > ls -l $NCARG_ROOT/lib/ncarg/database
> >
> > It should look something like this:
> >
> > drwxrwxr-x 15 haley CIT\Domain Users 510 Dec 5 11:24 rangs/
> >
> > Also, make sure you don't have any other environment variables set:
> >
> > env | grep NCARG
> > ncargpath rangs
> >
> > ncargpath rangs should report "/usr/local/ncl-6.1.2/lib/ncarg/database/rangs". If it doesn't, then this means you either have NCARG_ROOT or some other environment variable set incorrectly.
> >
> > --Mary
> >
> >
> > On Dec 14, 2013, at 3:17 PM, Alberto Mario Striedinger Pinilla <astriedinger@gmail.com> wrote:
> >
> > > Hello to all,
> > >
> > > sorry to disturb again. I already tried that, and again now, with no good results. I will try reinstalling the binary libraries just in case. =/
> > >
> > >
> > > Alberto M. Striedinger. P.
> > > Student Intern Researcher at MeteoConsult .NL.
> > > MSc. Sustainable Energy Technology
> > > Eindhoven University of Technology
> > > BSc.Mechanical Engineering
> > > Universidad del Norte & USF
> > > +31
> > >
> > >
> > >
> > >
> > > On Sat, Dec 14, 2013 at 11:04 PM, Karin Meier-Fleischer <meier-fleischer@dkrz.de> wrote:
> > > Hi Alberto,
> > >
> > > I think you must unset the NCARG_RANGS environment variable if you have all the ranges files
> > > in the recommended directory.
> > >
> > > Bye,
> > > Karin
> > >
> > >
> > > Am 14.12.2013 um 22:24 schrieb Alberto Mario Striedinger Pinilla <astriedinger@gmail.com>:
> > >
> > >> Hello Karin, and all
> > >>
> > >>
> > >> Thank you very much for the fast response XD. As you show in you directory. I do have the same. My rangs are located in the same directory, and I have even set en environment variable NCARG_RANGS to the location.
> > >>
> > >> My environment variables in my .bashrc are :
> > >> export NCARG_ROOT=/usr/local/ncl-6.1.2
> > >> export NCARG_RANGS=/usr/local/ncl-6.1.2/lib/ncarg/database/rangs
> > >>
> > >> And doing ll in my rangs directory I have the same:
> > >> alberto@alberto-ThinkPad-W520 /usr/local/ncl-6.1.2/lib/ncarg/database/rangs $ ll
> > >> total 137644
> > >> -rw-r--r-- 1 alberto alberto 89496428 mei 13 1997 gshhs(0).rim
> > >> -rw-r--r-- 1 alberto alberto 20775224 mei 13 1997 gshhs(1).rim
> > >> -rw-r--r-- 1 alberto alberto 5099196 mei 13 1997 gshhs(2).rim
> > >> -rw-r--r-- 1 alberto alberto 1109192 mei 13 1997 gshhs(3).rim
> > >> -rw-r--r-- 1 alberto alberto 170948 mei 13 1997 gshhs(4).rim
> > >> -rw-r--r-- 1 alberto alberto 259200 mei 6 1997 rangs(0).cat
> > >> -rw-r--r-- 1 alberto alberto 6518664 feb 1 1999 rangs(0).cel
> > >> -rw-r--r-- 1 alberto alberto 259200 mei 6 1997 rangs(1).cat
> > >> -rw-r--r-- 1 alberto alberto 5945492 feb 1 1999 rangs(1).cel
> > >> -rw-r--r-- 1 alberto alberto 259200 mei 6 1997 rangs(2).cat
> > >> -rw-r--r-- 1 alberto alberto 4062215 feb 1 1999 rangs(2).cel
> > >> -rw-r--r-- 1 alberto alberto 259200 mei 5 1997 rangs(3).cat
> > >> -rw-r--r-- 1 alberto alberto 3398642 feb 1 1999 rangs(3).cel
> > >> -rw-r--r-- 1 alberto alberto 259200 mei 5 1997 rangs(4).cat
> > >> -rw-r--r-- 1 alberto alberto 3045848 jan 29 1999 rangs(4).cel
> > >>
> > >>
> > >> As you can see , the only difference is the permission in the files, they are read for all the other users. But since I am the only one as this is my personal pc.
> > >>
> > >> Thanks again for your response and the colour set up work this time XD. HAve a nice evening
> > >>
> > >>
> > >>
> > >>
> > >> Alberto M. Striedinger. P.
> > >> Student Intern Researcher at MeteoConsult .NL.
> > >> MSc. Sustainable Energy Technology
> > >> Eindhoven University of Technology
> > >> BSc.Mechanical Engineering
> > >> Universidad del Norte & USF
> > >> +31
> > >>
> > >>
> > >>
> > >>
> > >> On Sat, Dec 14, 2013 at 9:45 PM, Karin Meier-Fleischer <meier-fleischer@dkrz.de> wrote:
> > >> Dear Alberto,
> > >>
> > >> Problem 1: the RANGS/GSHHS files should be stored in $NCARG_ROOT/lib/ncarg/database/rangs directory.
> > >>
> > >> >> ls -la $NCARG_ROOT/lib/ncarg/database/rangs
> > >> total 275296
> > >> drwxr-xr-x 18 k204045 staff 612 14 Okt 16:44 .
> > >> drwxr-xr-x@ 33 k204045 staff 1122 14 Okt 16:44 ..
> > >> -rwxr-xr-x 1 k204045 staff 89496428 14 Okt 16:44 gshhs(0).rim
> > >> -rwxr-xr-x 1 k204045 staff 20775224 14 Okt 16:44 gshhs(1).rim
> > >> -rwxr-xr-x 1 k204045 staff 5099196 14 Okt 16:44 gshhs(2).rim
> > >> -rwxr-xr-x 1 k204045 staff 1109192 14 Okt 16:44 gshhs(3).rim
> > >> -rwxr-xr-x 1 k204045 staff 170948 14 Okt 16:44 gshhs(4).rim
> > >> -rwxr-xr-x 1 k204045 staff 259200 14 Okt 16:44 rangs(0).cat
> > >> -rwxr-xr-x 1 k204045 staff 6518664 14 Okt 16:44 rangs(0).cel
> > >> -rwxr-xr-x 1 k204045 staff 259200 14 Okt 16:44 rangs(1).cat
> > >> -rwxr-xr-x 1 k204045 staff 5945492 14 Okt 16:44 rangs(1).cel
> > >> -rwxr-xr-x 1 k204045 staff 259200 14 Okt 16:44 rangs(2).cat
> > >> -rwxr-xr-x 1 k204045 staff 4062215 14 Okt 16:44 rangs(2).cel
> > >> -rwxr-xr-x 1 k204045 staff 259200 14 Okt 16:44 rangs(3).cat
> > >> -rwxr-xr-x 1 k204045 staff 3398642 14 Okt 16:44 rangs(3).cel
> > >> -rwxr-xr-x 1 k204045 staff 259200 14 Okt 16:44 rangs(4).cat
> > >> -rwxr-xr-x 1 k204045 staff 3045848 14 Okt 16:44 rangs(4).cel
> > >>
> > >> If you don't want to install the RANGS files in the recommended directory, you can set the environment variable
> > >> NCARG_RANGS to the directory containing the files.
> > >>
> > >>
> > >> Problem 2: You generate the contour plot before you have defined a colormap, so NCL will take the default
> > >> colormap.
> > >>
> > >> To use the colormap with gsn_define_colormap move the call upward to the line below line 298.
> > >>
> > >> wks = gsn_open_wks(type,psoutfilename)
> > >> gsn_define_colormap(wks,"WhViBlGrYeOrReWh")
> > >>
> > >> Bye,
> > >> Karin
> > >>
> > >>
> > >> Am 14.12.2013 um 21:14 schrieb Alberto Mario Striedinger Pinilla <astriedinger@gmail.com>:
> > >>
> > >>> ​Dear all,
> > >>>
> > >>> I am having 2 problems when plotting contour maps of a variable with ncl 6.1.2. Please let me know what could be causing these to happen:
> > >>>
> > >>> Problem 1:
> > >>> I am plotting while accessing RANGS. I have no problem if I use the medium or low resolutions. But once I try to use RANGS I get these errors:
> > >>>
> > >>> fatal:MapRGDHDrawMapList: MDRGOL/MDRGOF - ERROR OPENING RANGS/GSHHS CAT FILE
> > >>> fatal:PlotManagerPostDraw: error in plot post-draw
> > >>> fatal:_NhlPlotManagerDraw: PostDraw error
> > >>>
> > >>>
> > >>> I thought the problem was permissions and ownership, but all folders and files (including .nc files) are not restricted.
> > >>> At the end I do get the plot I want but, the coast lines do not appear, and the labels, titles, and other texts in the plot do not appear either.
> > >>>
> > >>> Problem 2:
> > >>> This may be a trivial problem, but I Say it anyway​
> > >>> ​My colour scale is nit working properly, I am using the colour name :
> > >>> gsn_define_colormap(wks,"
> > >>> WhViBlGrYeOrReWh") --line : 347 in the code
> > >>> But the colours appearing are not those set in the NCL website. THe NCL default colours do work though.
> > >>> ------
> > >>>
> > >>> The RANGS in my directory are all in the same folder rangs, and where recently replaced yesterday just in case I happened to have bad files, but that did not help either.
> > >>>
> > >>> I am providing two plot files, one that works under the lower resolutions, and the one using RANGS.
> > >>> I am providing the code I used, the file from the variable comes from, and this is the code line I used when executing the commands on bash:
> > >>>
> > >>> ./contour_var_thanet.sh ~/Documents/thanet/test/wrfout_d03_2010-03-19_00\:00\:00 y y 51.27 1.27 51.67 1.8333 HFX 0 nc -62 -45 2
> > >>>
> > >>> where : ~/Documents/thanet/test/wrfout_d03_2010-03-19_00\:00\:00 is the file location
> > >>> where: y y 51.27 1.27 51.67 1.8333 HFX 0 nc -62 -45 2 is the input to my code.
> > >>> The code line wehre I use the map resources for the RANGS is : --line 282
> > >>>
> > >>> I thank you in advance, and look for your response.
> > >>>
> > >>> ​
> > >>> wrfout_d03_2010-03-19_00:00:00
> > >>> ​
> > >>>
> > >>> ​
> > >>> Alberto M. Striedinger. P.
> > >>> Student Intern Researcher at MeteoConsult .NL.
> > >>> MSc. Sustainable Energy Technology
> > >>> Eindhoven University of Technology
> > >>> BSc.Mechanical Engineering
> > >>> Universidad del Norte & USF
> > >>> +31
> > >>>
> > >>>
> > >>> ​
> > >>> <contour_var_thanet.sh><wrfout_d03_2010-03-19_00_00_00_contour_HFX_0.ps><wrfout_d03_2010-03-19_00_00_00_contour_HFX_0_RANGS.ps>_______________________________________________
> > >>> ncl-talk mailing list
> > >>> List instructions, subscriber options, unsubscribe:
> > >>> http://mailman.ucar.edu/mailman/listinfo/ncl-talk
> > >>
> > >> _________________________________
> > >> Karin Meier-Fleischer
> > >> Deutsches Klimarechenzentrum GmbH
> > >>
> > >> Application Support
> > >>
> > >> Visualization
> > >>
> > >> Bundesstrasse 45a
> > >> D-20146 Hamburg, Germany
> > >>
> > >> E-Mail:
> > >> meier-fleischer@dkrz.de
> > >>
> > >> Internet:
> > >> http://www.dkrz.de/
> > >>
> > >> Phone:
> > >> +49 40 460094 126
> > >>
> > >> Fax:
> > >> +49 40 460094 270
> > >>
> > >>
> > >
> > > _________________________________
> > > Karin Meier-Fleischer
> > > Deutsches Klimarechenzentrum GmbH
> > >
> > > Application Support
> > >
> > > Visualization
> > >
> > > Bundesstrasse 45a
> > > D-20146 Hamburg, Germany
> > >
> > > E-Mail:
> > > meier-fleischer@dkrz.de
> > >
> > > Internet:
> > > http://www.dkrz.de/
> > >
> > > Phone:
> > > +49 40 460094 126
> > >
> > > Fax:
> > > +49 40 460094 270
> > >
> > >
> > > _______________________________________________
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> >
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Received on Mon Dec 16 12:43:18 2013

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