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When using indexed colors, you can only access the first 254 colors of a 256-color color map. The first two indexes are taken up by the background and foreground colors.

[Color index 0 = white / color index 1 = black]
[Download NEO_div_vegetation_c.rgb file and put in $NCARG_ROOT/lib/ncarg/colormaps, or use NCARG_COLORMAPS.]
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Sample NCL script usages:
;---Using the color map to define colors for contours or vectors
  cmap = read_colormap_file("NEO_div_vegetation_c")    ; 256 x 4 float array
  res@cnFillPalette = cmap     ; This assures you span all 256 colors
  res@vcLevelPalette = cmap
;
; Using this to set the color map will only use the
; first 254 colors of a 256-color map
;
  res@cnFillPalette  = "NEO_div_vegetation_c"
  res@vcLevelPalette = "NEO_div_vegetation_c"
;---Using the color map to define a color map for the workstation
  gsn_define_colormap(wks,"NEO_div_vegetation_c")
